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FAM86B2-DT FAM86B2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506990, updated on 28-Oct-2024

Summary

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Official Symbol
FAM86B2-DTprovided by HGNC
Official Full Name
FAM86B2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48726
See related
Ensembl:ENSG00000227888 AllianceGenome:HGNC:48726
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 4.6), thyroid (RPKM 4.3) and 25 other tissues See more
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Genomic context

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See FAM86B2-DT in Genome Data Viewer
Location:
8p23.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (12437013..12566845)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (12716595..12833567)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (12294522..12424354)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12277688-12278525 Neighboring gene Putative protein FAM90A2P Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12283742-12284386 Neighboring gene ALG1 like 12, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12292881-12293524 Neighboring gene Sharpr-MPRA regulatory regions 5244/11724 and 13137 Neighboring gene family with sequence similarity 86 member B2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12302867-12303469 Neighboring gene defensin beta 109E (pseudogene) Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12338855-12339594 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12344744-12345435 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12354567-12355426 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12355427-12356286 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12358763-12359264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12368735-12369234 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12380441-12380940 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:12382083-12382620 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:12383331-12384025 Neighboring gene NANOG hESC enhancer GRCh37_chr8:12388844-12389380 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:12394565-12395190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12396623-12397488 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12400676-12401176 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12401177-12401677 Neighboring gene uncharacterized LOC729732 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12404893-12405684 Neighboring gene RPS3A pseudogene 34 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12445595-12446325 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12446326-12447056 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12447057-12447786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:12448852-12449438 Neighboring gene Sharpr-MPRA regulatory region 3896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12468951-12469450 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12471525-12472026 Neighboring gene RPS3A pseudogene 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. Uren PJ, et al. RNA Biol, 2016. PMID 26760575, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Clone Names

  • FLJ38662, DKFZp434N2116

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040091.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC087203, AC130352, AL539380, BC037934

  2. NR_040092.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons, includes an alternate exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC068587, AC087203, AK095981, AL539380
    Related
    ENST00000744394.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    12437013..12566845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    5632278..5762234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    12716595..12833567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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