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CT47A12 cancer/testis antigen family 47 member A12 [ Homo sapiens (human) ]

Gene ID: 100507170, updated on 10-Oct-2024

Summary

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Official Symbol
CT47A12provided by HGNC
Official Full Name
cancer/testis antigen family 47 member A12provided by HGNC
Primary source
HGNC:HGNC:33292
See related
Ensembl:ENSG00000226685 AllianceGenome:HGNC:33292
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT47; CT47.12
Annotation information
Annotation category: suggests misassembly
Expression
Restricted expression toward testis (RPKM 5.8) See more
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Genomic context

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See CT47A12 in Genome Data Viewer
Location:
Xq24
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (120877490..120932301, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (119253165..119256487, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (120011344..120066155, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene proliferation-associated 2G4 pseudogene 1 Neighboring gene cancer/testis antigen family 47 member B1 Neighboring gene cancer/testis antigen family 47 member A11 Neighboring gene cancer/testis antigen family 47 member A10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. Chen YT, et al. Genes Chromosomes Cancer, 2006 Apr. PMID 16382448
  2. A Genome-Wide CRISPR Screen Identifies Genes Critical for Resistance to FLT3 Inhibitor AC220. Hou P, et al. Cancer Res, 2017 Aug 15. PMID 28625976, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
cancer/testis antigen 47A
Names
cancer/testis CT47 family, member 12
cancer/testis antigen 47
cancer/testis antigen 47A family member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001242922.2 → NP_001229851.1  cancer/testis antigen 47A

    See identical proteins and their annotated locations for NP_001229851.1

    Status: VALIDATED

    Source sequence(s)
    AC008162, AL670379
    Consensus CDS
    CCDS56607.1
    UniProtKB/Swiss-Prot
    Q5JQC4, Q8N747
    UniProtKB/TrEMBL
    A0AAG2UWD2
    Related
    ENSP00000391318.2, ENST00000419982.3
    Conserved Domains (1) summary
    pfam15623
    Location:1 → 263
    CT47; Cancer/testis gene family 47

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    120877490..120932301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017029190.2 → XP_016884679.1  cancer/testis antigen 47A isoform X1

    Conserved Domains (1) summary
    pfam15623
    Location:1 → 247
    CT47; Cancer/testis gene family 47

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    119253165..119256487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054328239.1 → XP_054184214.1  cancer/testis antigen 47A isoform X2

    UniProtKB/Swiss-Prot
    Q5JQC4, Q8N747
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5JQC4.1 GenPept UniProtKB/Swiss-Prot:Q5JQC4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials