CT47A12 cancer/testis antigen family 47 member A12 [Homo sapiens (human)] - Gene

Summary

Official Symbol: CT47A12provided by HGNC
Official Full Name: cancer/testis antigen family 47 member A12provided by HGNC
Primary source: HGNC:HGNC:33292
See related: Ensembl:ENSG00000226685 AllianceGenome:HGNC:33292
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: CT47; CT47.12
Annotation information: Annotation category: suggests misassembly
Expression: Restricted expression toward testis (RPKM 5.8) See more
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Genomic context

Location:: Xq24

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	X	NC_000023.11 (120877490..120932301, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	X	NC_060947.1 (119253165..119256487, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	X	NC_000023.10 (120011344..120066155, complement)

Chromosome X - NC_000023.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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General protein information

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Preferred Names: cancer/testis antigen 47A

Names: cancer/testis CT47 family, member 12; cancer/testis antigen 47; cancer/testis antigen 47A family member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001242922.2 → NP_001229851.1 cancer/testis antigen 47A

See identical proteins and their annotated locations for NP_001229851.1

Status: VALIDATED

Source sequence(s)

AC008162, AL670379

Consensus CDS

CCDS56607.1

UniProtKB/Swiss-Prot

Q5JQC4, Q8N747

Related

ENSP00000391318.2, ENST00000419982.3

Conserved Domains (1) summary

pfam15623
Location:1 → 263

CT47; Cancer/testis gene family 47

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000023.11 Reference GRCh38.p14 Primary Assembly

Range

120877490..120932301 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_017029190.2 → XP_016884679.1 cancer/testis antigen 47A isoform X1

Conserved Domains (1) summary

pfam15623
Location:1 → 247

CT47; Cancer/testis gene family 47