U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100507403 uncharacterized LOC100507403 [ Homo sapiens (human) ]

Gene ID: 100507403, updated on 22-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC100507403
Gene description
uncharacterized LOC100507403
See related
Ensembl:ENSG00000253123
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100507403 in Genome Data Viewer
Location:
8p11.23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (37327364..37331931, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (37602713..37607282, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (37184882..37189449, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379377 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:36956985-36957648 Neighboring gene VISTA enhancer hs631 Neighboring gene NANOG hESC enhancer GRCh37_chr8:36964300-36964801 Neighboring gene nontranscribed ENCODE-defined enhancer downstream of SMARCE1P4 Neighboring gene SMARCE1 pseudogene 4 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:37000266-37001465 Neighboring gene Sharpr-MPRA regulatory region 9155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27224 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19105 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:37136489-37137688 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:37188590-37189789 Neighboring gene uncharacterized LOC124901930 Neighboring gene VISTA enhancer hs302 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27225 Neighboring gene long intergenic non-protein coding RNA 1605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37310647-37311224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37374880-37375400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37375401-37375919 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:37378682-37379881 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:37387319-37387531 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37400987-37401487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37404685-37405219 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37405335-37405836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37405837-37406336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37413320-37413920 Neighboring gene uncharacterized LOC105379379 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:37417549-37418050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:37418051-37418550

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188014.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091182

  2. NR_188015.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091182
    Related
    ENST00000518765.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    37327364..37331931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    37602713..37607282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials