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DPH6-DT DPH6 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100507466, updated on 22-Oct-2024

Summary

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Official Symbol
DPH6-DTprovided by HGNC
Official Full Name
DPH6 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:44147
See related
Ensembl:ENSG00000248079 AllianceGenome:HGNC:44147
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DPH6-AS1; ATPBD4-AS1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See DPH6-DT in Genome Data Viewer
Location:
15q14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (35546195..35859001)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (33351548..33664266)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (35838396..36151202)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene diphthamine biosynthesis 6 Neighboring gene uncharacterized LOC124903464 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 45 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:35837367-35838301 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6293 Neighboring gene Sharpr-MPRA regulatory region 8232 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9191 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:36165880-36167079 Neighboring gene uncharacterized LOC105370766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9192 Neighboring gene microRNA 4510 Neighboring gene long intergenic non-protein coding RNA 2853

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population. Pyun JA, et al. Menopause, 2014 May. PMID 24045676
  2. Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy. Leandro-García LJ, et al. J Med Genet, 2013 Sep. PMID 23776197

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population.
EBI GWAS Catalog
Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • ATPBD4 antisense RNA 1 (head to head)
  • ATPBD4 antisense RNA 1 (non-protein coding)
  • DPH6 antisense RNA 1 (head to head)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038251.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068867, BC025664
    Related
    ENST00000819970.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    35546195..35859001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    33351548..33664266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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