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LOC100507472 uncharacterized LOC100507472 [ Homo sapiens (human) ]

Gene ID: 100507472, updated on 10-Oct-2023

Summary

Gene symbol
LOC100507472
Gene description
uncharacterized LOC100507472
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
15q26.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (101307251..101309304, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (99062316..99064369, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (101847456..101849509, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10192 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101834407-101835038 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6889 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10193 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10194 Neighboring gene small nuclear ribonucleoprotein polypeptide A' Neighboring gene SNRPA1 divergent transcript Neighboring gene proprotein convertase subtilisin/kexin type 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101866838-101867338 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6890 Neighboring gene PCSK6 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101897421-101898364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101899309-101900252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101900253-101901196 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101903043-101903860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101910467-101910968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101910969-101911468 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:101926563-101927064 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:101927065-101927564 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101951801-101952617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101966524-101967114 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101991219-101991952 Neighboring gene Sharpr-MPRA regulatory region 2389 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:101996796-101996999 Neighboring gene uncharacterized LOC124903566 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:102009487-102010686

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045387.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023024, DA335777

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    101307251..101309304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    99062316..99064369 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)