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LINC02192 long intergenic non-protein coding RNA 2192 [ Homo sapiens (human) ]

Gene ID: 100507534, updated on 22-Oct-2024

Summary

Official Symbol
LINC02192provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2192provided by HGNC
Primary source
HGNC:HGNC:53054
See related
Ensembl:ENSG00000261325 AllianceGenome:HGNC:53054
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02192 in Genome Data Viewer
Location:
16q12.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (47849314..47887130, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (53646123..53683938, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (47883225..47921041, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene phosphorylase kinase regulatory subunit beta Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 pseudogene 11 Neighboring gene NANOG hESC enhancer GRCh37_chr16:47660051-47660552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:47752345-47752845 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:47767625-47768824 Neighboring gene uncharacterized LOC105371236 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10788 Neighboring gene NANOG hESC enhancer GRCh37_chr16:47882414-47883106 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:47898419-47899379 Neighboring gene long intergenic non-protein coding RNA 2133 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:47920785-47921984 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr16:47922340-47923153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:47937837-47938338 Neighboring gene uncharacterized LOC124903685 Neighboring gene uncharacterized LOC105371237

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110649.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC141846, BC039433
    Related
    ENST00000570024.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    47849314..47887130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    53646123..53683938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)