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DNAJC7 DnaJ heat shock protein family (Hsp40) member C7 [ Sus scrofa (pig) ]

Gene ID: 100524895, updated on 17-Aug-2024

Summary

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Official Symbol
DNAJC7provided by VGNC
Official Full Name
DnaJ heat shock protein family (Hsp40) member C7provided by VGNC
Primary source
VGNC:VGNC:98987
See related
Ensembl:ENSSSCG00000017419
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 69.8), psoas major muscle (RPKM 39.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DNAJC7 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (20725937..20756295)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (21016177..21046341)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene DExH-box helicase 58 Neighboring gene zinc finger protein 385C Neighboring gene NFKB inhibitor interacting Ras like 2 Neighboring gene 2',3'-cyclic nucleotide 3' phosphodiesterase Neighboring gene outer dynein arm docking complex subunit 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    20725937..20756295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003131409.5 → XP_003131457.2  LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 7

    UniProtKB/TrEMBL
    A0A8D0LLE8, A0A8D0NIU8, A0A8D0XW23, A0A8D1S3L0
    Related
    ENSSSCP00000051074.1, ENSSSCT00000042589.3
    Conserved Domains (4) summary
    COG0484
    Location:380 → 469
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:257 → 284
    TPR; TPR repeat [structural motif]
    cl26002
    Location:35 → 411
    TPR_11; TPR repeat
    cl26005
    Location:253 → 353
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
Nucleotide Protein
Heading Accession and Version

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