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LOC100533340 synaptotagmin, p65 [ Aplysia californica (California sea hare) ]

Gene ID: 100533340, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100533340
Gene description
synaptotagmin, p65
See related
EnsemblRapid:LOC100533340
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aplysia californica
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Tectipleura; Aplysiida; Aplysioidea; Aplysiidae; Aplysia
Also known as
p65; SYT1
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC100533340 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current AplCal3.0 (GCF_000002075.1) Unplaced Scaffold NW_004797289.1 (154690..178297)

NW_004797289.1Genomic Context describing neighboring genes Neighboring gene unconventional myosin-VI Neighboring gene acetyl-CoA acetyltransferase, cytosolic Neighboring gene zinc finger protein 593 Neighboring gene NMDA-type glutamate receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004797289 Unplaced Scaffold Reference AplCal3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion-regulated exocytosis of neurotransmitter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dense core granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-1
Names
synaptotagmin I VQ/C2B-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001204624.1 → NP_001191553.1  synaptotagmin-1 isoform 1

    See identical proteins and their annotated locations for NP_001191553.1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
    Source sequence(s)
    AY325502
    UniProtKB/Swiss-Prot
    P41823, Q6EI08
    Related
    NP_001191553.1, NM_001204624.1
    Conserved Domains (2) summary
    cd08385
    Location:153 → 276
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:287 → 422
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1

  2. NM_001204636.1 → NP_001191565.1  synaptotagmin-1 isoform 2

    See identical proteins and their annotated locations for NP_001191565.1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (2) encodes a protein (isoform 2) which is shorter by two amino acids, compared to isoform 1.
    Source sequence(s)
    U03125
    UniProtKB/Swiss-Prot
    P41823, Q6EI08
    Related
    NP_001191565.1, NM_001204636.1
    Conserved Domains (2) summary
    cd08385
    Location:151 → 274
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:285 → 420
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1

RefSeqs of Annotated Genomes: Aplysia californica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AplCal3.0 Primary Assembly

Genomic

  1. NW_004797289.1 Reference AplCal3.0 Primary Assembly

    Range
    154690..178297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P41823.2 GenPept UniProtKB/Swiss-Prot:P41823

Gene LinkOut

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