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Gm38431 predicted gene, 38431 [ Mus musculus (house mouse) ]

Gene ID: 100568458, updated on 17-Aug-2024

Summary

Official Symbol
Gm38431provided by MGI
Official Full Name
predicted gene, 38431provided by MGI
Primary source
MGI:MGI:5621316
See related
AllianceGenome:MGI:5621316
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Raver1; Raver1-fdx1l
Summary
This gene represents a read-through transcript composed of Raver1 and Fdx1l sequence. This transcript is thought to be non-coding because it would be subject to nonsense-mediated mRNA decay (NMD). [provided by RefSeq, Apr 2011]
Expression
Ubiquitous expression in thymus adult (RPKM 81.3), duodenum adult (RPKM 66.9) and 28 other tissues See more
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Genomic context

See Gm38431 in Genome Data Viewer
Location:
9 A3; 9
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (20978810..21003304, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (21067514..21092008, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26592 Neighboring gene intercellular adhesion molecule 5, telencephalin Neighboring gene zinc finger, GATA-like protein 1 Neighboring gene ferredoxin 2 Neighboring gene microRNA 7082 Neighboring gene ribonucleoprotein, PTB-binding 1 Neighboring gene STARR-positive B cell enhancer ABC_E459 Neighboring gene tyrosine kinase 2 Neighboring gene STARR-positive B cell enhancer ABC_E1780 Neighboring gene STARR-positive B cell enhancer ABC_E2282 Neighboring gene STARR-positive B cell enhancer ABC_E5054 Neighboring gene cell division cycle 37 Neighboring gene predicted gene, 36118

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Readthrough Gm38431

Included genes: Fdx2, Raver1

Other Names

  • Protein raver-1
  • Raver1-Fdx1l readthrough
  • Ribonucleoprotein PTB-binding 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038081.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163637, AK004919

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    20978810..21003304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)