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MIR4643 microRNA 4643 [ Homo sapiens (human) ]

Gene ID: 100616174, updated on 10-Oct-2023

Summary

Official Symbol
MIR4643provided by HGNC
Official Full Name
microRNA 4643provided by HGNC
Primary source
HGNC:HGNC:41814
See related
Ensembl:ENSG00000263734 miRBase:MI0017270; AllianceGenome:HGNC:41814
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

See MIR4643 in Genome Data Viewer
Location:
6q15
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (91521660..91521737)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (92733415..92733492)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (92231378..92231455)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986623 Neighboring gene uncharacterized LOC105377893 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:91379294-91380249 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:91380250-91381204 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:91383116-91384071 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:91384072-91385026 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:91385983-91386936 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:91388246-91389050 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:91489789-91490333 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:91617235-91618434 Neighboring gene NANOG hESC enhancer GRCh37_chr6:91624822-91625331 Neighboring gene NANOG hESC enhancer GRCh37_chr6:91867325-91867853 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:92007857-92008449 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:92009635-92010225 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:92009042-92009634 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:92008450-92009041 Neighboring gene uncharacterized LOC107986624 Neighboring gene Sharpr-MPRA regulatory region 15648 Neighboring gene MPRA-validated peak5963 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24837 Neighboring gene NANOG hESC enhancer GRCh37_chr6:92363967-92364476 Neighboring gene uncharacterized LOC105377894 Neighboring gene cancer susceptibility 6 Neighboring gene MT-ATP6 pseudogene 25

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_039786.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL512600
    Related
    ENST00000577473.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    91521660..91521737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    92733415..92733492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)