U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Spon2 spondin 2, extracellular matrix protein [ Mus musculus (house mouse) ]

Gene ID: 100689, updated on 2-Nov-2024

Summary

Official Symbol
Spon2provided by MGI
Official Full Name
spondin 2, extracellular matrix proteinprovided by MGI
Primary source
MGI:MGI:1923724
See related
Ensembl:ENSMUSG00000037379 AllianceGenome:MGI:1923724
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mindin; Mspondin; M-spondin; 2310045I24Rik
Summary
Enables antigen binding activity and lipopolysaccharide binding activity. Acts upstream of or within several processes, including defense response to other organism; opsonization; and positive regulation of cytokine production. Located in extracellular matrix and extracellular space. Orthologous to human SPON2 (spondin 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in subcutaneous fat pad adult (RPKM 50.9), colon adult (RPKM 42.5) and 17 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Spon2 in Genome Data Viewer
Location:
5 B1; 5 17.5 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (33370862..33375596, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (33213518..33218254, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 57738 Neighboring gene STARR-seq mESC enhancer starr_12816 Neighboring gene solute carrier family 5 (sodium/glucose cotransporter), member 1 Neighboring gene STARR-seq mESC enhancer starr_12817 Neighboring gene STARR-positive B cell enhancer ABC_E3567 Neighboring gene predicted gene, 54327 Neighboring gene C-terminal binding protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E8049

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables antigen binding IDA
Inferred from Direct Assay
more info
PubMed 
enables antigen binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables lipopolysaccharide binding IDA
Inferred from Direct Assay
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 
involved_in cell adhesion ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within cellular response to lipopolysaccharide IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within cellular response to lipopolysaccharide IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cellular response to platelet-derived growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within defense response to bacterium IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within defense response to fungus IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within defense response to virus IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within induction of bacterial agglutination IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within innate immune response IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of interleukin-6 production IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of interleukin-6 production IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within mast cell mediated immunity IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within opsonization IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within opsonization IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of interleukin-6 production IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within positive regulation of interleukin-6 production IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of macrophage cytokine production IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within positive regulation of macrophage cytokine production IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of tumor necrosis factor production IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within positive regulation of tumor necrosis factor production IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within response to lipopolysaccharide IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of tumor necrosis factor production IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of tumor necrosis factor production IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in vascular associated smooth muscle cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in vascular associated smooth muscle cell proliferation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular matrix IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular space HDA PubMed 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133903.3NP_598664.3  spondin-2 precursor

    See identical proteins and their annotated locations for NP_598664.3

    Status: VALIDATED

    Source sequence(s)
    AC115070, AK028987, BB848417
    Consensus CDS
    CCDS19200.1
    UniProtKB/Swiss-Prot
    Q6SJD8, Q8BMS2
    UniProtKB/TrEMBL
    Q8VD28
    Related
    ENSMUSP00000042701.5, ENSMUST00000046186.8
    Conserved Domains (2) summary
    smart00209
    Location:279329
    TSP1; Thrombospondin type 1 repeats
    pfam06468
    Location:40227
    Spond_N; Spondin_N

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    33370862..33375596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006503622.3XP_006503685.1  spondin-2 isoform X1

    See identical proteins and their annotated locations for XP_006503685.1

    UniProtKB/Swiss-Prot
    Q6SJD8, Q8BMS2
    UniProtKB/TrEMBL
    Q8VD28
    Related
    ENSMUST00000201199.2
    Conserved Domains (2) summary
    smart00209
    Location:279329
    TSP1; Thrombospondin type 1 repeats
    pfam06468
    Location:40227
    Spond_N; Spondin_N