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Pds5b PDS5 cohesin associated factor B [ Mus musculus (house mouse) ]

Gene ID: 100710, updated on 28-Oct-2024

Summary

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Official Symbol
Pds5bprovided by MGI
Official Full Name
PDS5 cohesin associated factor Bprovided by MGI
Primary source
MGI:MGI:2140945
See related
Ensembl:ENSMUSG00000034021 AllianceGenome:MGI:2140945
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AS3; Aprin; WAP-Her-2; mKIAA0979; Tg(Wap-ERBB2)229Wzw
Summary
Predicted to enable DNA binding activity. Acts upstream of or within lens development in camera-type eye. Predicted to be located in chromatin and nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system; nervous system; and sensory organ. Orthologous to human PDS5B (PDS5 cohesin associated factor B). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Broad expression in CNS E11.5 (RPKM 11.8), limb E14.5 (RPKM 9.2) and 22 other tissues See more
Orthologs
human all
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Genomic context

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See Pds5b in Genome Data Viewer
Location:
5 G3; 5 89.61 cM
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (150597178..150734174)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (150673713..150810669)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene breast cancer 2, early onset Neighboring gene predicted gene 42529 Neighboring gene STARR-positive B cell enhancer ABC_E3639 Neighboring gene STARR-positive B cell enhancer mm9_chr5:151397981-151398282 Neighboring gene STARR-seq mESC enhancer starr_14956 Neighboring gene NEDD4 binding protein 2-like 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:151414417-151414570 Neighboring gene STARR-positive B cell enhancer ABC_E10368 Neighboring gene STARR-positive B cell enhancer ABC_E2774 Neighboring gene NEDD4 binding protein 2-like 2 Neighboring gene STARR-positive B cell enhancer ABC_E6410 Neighboring gene STARR-positive B cell enhancer ABC_E6411 Neighboring gene STARR-positive B cell enhancer ABC_E3640 Neighboring gene STARR-seq mESC enhancer starr_14958 Neighboring gene STARR-positive B cell enhancer ABC_E4810 Neighboring gene predicted gene, 40353 Neighboring gene predicted gene, 24630 Neighboring gene predicted gene, 26013 Neighboring gene STARR-seq mESC enhancer starr_14960 Neighboring gene predicted gene, 36447 Neighboring gene STARR-seq mESC enhancer starr_14962 Neighboring gene STARR-seq mESC enhancer starr_14963 Neighboring gene klotho

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A better immune reaction to Erbb-2 tumors is elicited in mice by DNA vaccines encoding rat/human chimeric proteins. Quaglino E, et al. Cancer Res, 2010 Apr 1. PMID 20332241
  2. Dendritic cells pulsed with an anti-idiotype antibody mimicking Her-2/neu induced protective antitumor immunity in two lines of Her-2/neu transgenic mice. Saha A, et al. Cell Immunol, 2010. PMID 20236626
  3. Combining human and rat sequences in her-2 DNA vaccines blunts immune tolerance and drives antitumor immunity. Jacob JB, et al. Cancer Res, 2010 Jan 1. PMID 20048073, Free PMC Article
  4. Genetic regulation of the response to Her-2 DNA vaccination in human Her-2 transgenic mice. Radkevich-Brown O, et al. Cancer Res, 2009 Jan 1. PMID 19118005, Free PMC Article
  5. Overexpression of APRIN inhibits differentiation and proliferation and promotes apoptosis in P19 embryonal carcinoma cells. Zhou X, et al. Mol Biol Rep, 2013 Jan. PMID 23054015

See all (49) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Circular RNA CircPDS5B impairs angiogenesis following ischemic stroke through its interaction with hnRNPL to inactivate VEGF-A.
    Title: Circular RNA CircPDS5B impairs angiogenesis following ischemic stroke through its interaction with hnRNPL to inactivate VEGF-A.
  2. PDS5A and PDS5B differentially affect gene expression without altering cohesin localization across the genome.
    Title: PDS5A and PDS5B differentially affect gene expression without altering cohesin localization across the genome.
  3. PDS5 proteins regulate the length of axial elements and telomere integrity during male mouse meiosis.
    Title: PDS5 proteins regulate the length of axial elements and telomere integrity during male mouse meiosis.
  4. findings demonstrate that Her2+/+ mice, similar to Pds5b-/- mice, are embryonic lethal and confirm the necessity for Pds5b in embryonic development
    Title: Embryonic Lethality in Homozygous Human Her-2 Transgenic Mice Due to Disruption of the Pds5b Gene.
  5. reduced accumulation of Aurora B at the inner centromere region in cells lacking Pds5B impairs its error correction function, promoting chromosome mis-segregation and aneuploidy
    Title: Pds5B is required for cohesion establishment and Aurora B accumulation at centromeres.
  6. demonstrates that overexpression of APRIN inhibits differentiation and proliferation and promotes apoptosis in P19 embryonal carcinoma cells.
    Title: Overexpression of APRIN inhibits differentiation and proliferation and promotes apoptosis in P19 embryonal carcinoma cells.
  7. While Pds5A(-/-) and Pds5B(-/-) mice die at birth, embryos harboring 3 mutant Pds5 alleles die between E11.5 and E12.5 most likely of heart failure, indicating that total Pds5 gene dosage is critical for normal development.
    Title: Dosage effects of cohesin regulatory factor PDS5 on mammalian development: implications for cohesinopathies.
  8. APRIN, in addition to its Pds5 similarity, has the features and localization of a hormone-induced chromatin regulator.
    Title: APRIN is a unique Pds5 paralog with features of a chromatin regulator in hormonal differentiation.
  9. Mice lacking sister chromatid cohesion protein PDS5B exhibit developmental abnormalities reminiscent of Cornelia de Lange syndrome.
    Title: Mice lacking sister chromatid cohesion protein PDS5B exhibit developmental abnormalities reminiscent of Cornelia de Lange syndrome.
  10. A paper used gene targeting in mice to demonstrate the function of PDS5B in embryonic development.
    Title: Mice lacking sister chromatid cohesion protein PDS5B exhibit developmental abnormalities reminiscent of Cornelia de Lange syndrome.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding ISO
Inferred from Sequence Orthology
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lens development in camera-type eye IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitotic sister chromatid cohesion ISO
Inferred from Sequence Orthology
more info
  
involved_in mitotic sister chromatid cohesion ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in negative regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
  
involved_in negative regulation of cell population proliferation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in chromatin ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
sister chromatid cohesion protein PDS5 homolog B
Names
Her-2 Tg
PDS5, regulator of cohesion maintenance, homolog B
androgen-induced proliferation inhibitor
androgen-induced prostate proliferative shutoff associated protein AS3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001346503.2 → NP_001333432.1  sister chromatid cohesion protein PDS5 homolog B isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC111126, AC158558
    Consensus CDS
    CCDS85012.1
    UniProtKB/Swiss-Prot
    Q4VA53
    Related
    ENSMUSP00000144572.2, ENSMUST00000202170.4

  2. NM_001421228.1 → NP_001408157.1  sister chromatid cohesion protein PDS5 homolog B isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC111126, AC158558

  3. NM_175310.7 → NP_780519.3  sister chromatid cohesion protein PDS5 homolog B isoform 1

    See identical proteins and their annotated locations for NP_780519.3

    Status: VALIDATED

    Source sequence(s)
    AC111126, AC158558
    Consensus CDS
    CCDS39412.1
    UniProtKB/Swiss-Prot
    Q3TNZ4, Q4VA53, Q7TSS4, Q80TM8, Q8BJ18, Q8BLH6, Q8BX77
    Related
    ENSMUSP00000016569.5, ENSMUST00000016569.11
    Conserved Domains (2) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl04813
    Location:1172 → 1275
    EIN3; Ethylene insensitive 3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    150597178..150734174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006504901.2 → XP_006504964.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    F8WHU5
    Related
    ENSMUSP00000038421.9, ENSMUST00000038900.15
    Conserved Domains (2) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    pfam07263
    Location:1175 → 1433
    DMP1; Dentin matrix protein 1 (DMP1)

  2. XM_006504904.2 → XP_006504967.1  sister chromatid cohesion protein PDS5 homolog B isoform X3

    Conserved Domains (2) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    pfam07263
    Location:1154 → 1412
    DMP1; Dentin matrix protein 1 (DMP1)

  3. XM_036164692.1 → XP_036020585.1  sister chromatid cohesion protein PDS5 homolog B isoform X4

    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    pfam05793
    Location:1154 → 1397
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    cd19953
    Location:31 → 661
    PDS5; Sister chromatid cohesion protein PDS5

  4. XM_030254020.1 → XP_030109880.1  sister chromatid cohesion protein PDS5 homolog B isoform X5

    Conserved Domains (2) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    pfam05793
    Location:1154 → 1396
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

  5. XM_006504905.4 → XP_006504968.1  sister chromatid cohesion protein PDS5 homolog B isoform X6

    Conserved Domains (3) summary
    PTZ00449
    Location:801 → 1055
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    sd00044
    Location:32 → 62
    HEAT; HEAT repeat [structural motif]
    pfam07263
    Location:934 → 1192
    DMP1; Dentin matrix protein 1 (DMP1)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4VA53.1 GenPept UniProtKB/Swiss-Prot:Q4VA53

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