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Tnrc18 trinucleotide repeat containing 18 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100768203, updated on 8-Mar-2024

Summary

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Gene symbol
Tnrc18
Gene description
trinucleotide repeat containing 18
Locus tag
I79_001670
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Tnrc18 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
27
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613618.1 (1048239..1118752)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (79294822..79388983, complement)

NW_003613618.1Genomic Context describing neighboring genes Neighboring gene actin beta Neighboring gene F-box and leucine rich repeat protein 18 Neighboring gene solute carrier family 29 member 4 Neighboring gene WD repeat domain, phosphoinositide interacting 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 18 protein; trinucleotide repeat-containing gene 18 protein
Names
Trinucleotide repeat-containing gene 18 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613618.1 Reference CriGri_1.0 Primary Assembly

    Range
    1048239..1118752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016978703.2 → XP_016834192.2  trinucleotide repeat-containing gene 18 protein isoform X1

    UniProtKB/TrEMBL
    A0A8C2QE94
    Conserved Domains (4) summary
    PHA03307
    Location:248 → 573
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK12323
    Location:2201 → 2421
    PRK12323; DNA polymerase III subunit gamma/tau
    cd04714
    Location:2707 → 2851
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cl02573
    Location:2100 → 2166
    Tudor_SF; Tudor domain superfamily

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    79294822..79388983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027413546.2 → XP_027269347.1  LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 18 protein isoform X2

    UniProtKB/TrEMBL
    A0A8C2QE94, A0A9J7JLI7
Nucleotide Protein Strain
Heading Accession and Version

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