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Sdk1 sidekick cell adhesion molecule 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100768773, updated on 8-Mar-2024

Summary

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Gene symbol
Sdk1
Gene description
sidekick cell adhesion molecule 1
Locus tag
I79_001679
See related
Ensembl:ENSCGRG00015013387
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Sdk1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
45
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613618.1 (1635262..2233433, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (77831487..78786413)

NW_003613618.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 5 subunit zeta 1 Neighboring gene forkhead box K1 Neighboring gene U6 spliceosomal RNA Neighboring gene caspase recruitment domain family member 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein sidekick-1; protein sidekick-1
Names
Protein sidekick-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613618.1 Reference CriGri_1.0 Primary Assembly

    Range
    1635262..2233433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035459983.1 → XP_035315874.1  LOW QUALITY PROTEIN: protein sidekick-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2LCY7
    Conserved Domains (7) summary
    smart00409
    Location:28 → 97
    IG; Immunoglobulin
    cd00063
    Location:1614 → 1707
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:681 → 767
    fn3; Fibronectin type III domain
    pfam07679
    Location:390 → 480
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:203 → 275
    Ig_3; Immunoglobulin domain
    cd00096
    Location:398 → 401
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:296 → 385
    Ig; Immunoglobulin domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    77831487..78786413
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035444149.1 → XP_035300040.1  protein sidekick-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2LCY7, A0A9J7GXU1
    Related
    ENSCGRP00015017465.2, ENSCGRT00015021458.2
    Conserved Domains (7) summary
    smart00409
    Location:87 → 156
    IG; Immunoglobulin
    cd00063
    Location:1673 → 1766
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:740 → 826
    fn3; Fibronectin type III domain
    pfam07679
    Location:449 → 539
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:262 → 334
    Ig_3; Immunoglobulin domain
    cd00096
    Location:457 → 460
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:355 → 444
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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