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Snx8 sorting nexin 8 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100769926, updated on 8-Mar-2024

Summary

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Gene symbol
Snx8
Gene description
sorting nexin 8
Locus tag
I79_001692
See related
Ensembl:ENSCGRG00015012832
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Snx8 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613618.1 (3387025..3436286)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (76979377..77029246, complement)

NW_003613618.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIF19 Neighboring gene eukaryotic translation initiation factor 3 subunit B Neighboring gene nudix hydrolase 1 Neighboring gene mitotic arrest deficient 1 like 1 Neighboring gene mitochondrial rRNA methyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-8
Names
Sorting nexin-8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613618.1 Reference CriGri_1.0 Primary Assembly

    Range
    3387025..3436286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035460173.1 → XP_035316064.1  sorting nexin-8 isoform X1

    UniProtKB/TrEMBL
    A0A8C2LLN2, A0A8C2QEV8
    Conserved Domains (2) summary
    cd06866
    Location:70 → 173
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:190 → 434
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  2. XM_035460175.1 → XP_035316066.1  sorting nexin-8 isoform X2

    UniProtKB/TrEMBL
    A0A8C2LLN2, A0A9J7JND9
    Conserved Domains (2) summary
    cd06866
    Location:70 → 173
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:190 → 433
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    76979377..77029246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027413507.2 → XP_027269308.1  sorting nexin-8 isoform X4

    UniProtKB/TrEMBL
    A0A8C2LLN2, A0A9J7JND9
    Conserved Domains (2) summary
    cd06866
    Location:70 → 173
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:190 → 433
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  2. XM_027413506.2 → XP_027269307.1  sorting nexin-8 isoform X3

    UniProtKB/TrEMBL
    A0A8C2LLN2, A0A8C2QEV8
    Related
    ENSCGRP00015016666.2, ENSCGRT00015020442.2
    Conserved Domains (2) summary
    cd06866
    Location:70 → 173
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:190 → 434
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  3. XM_027413508.2 → XP_027269309.1  sorting nexin-8 isoform X5

    UniProtKB/TrEMBL
    A0A9J7FVC2, G3GVF5
    Related
    ENSCGRP00015053250.1, ENSCGRT00015077094.1
Nucleotide Protein Strain
Heading Accession and Version

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