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LOC100792278 agamous-like MADS-box protein AGL18 [ Glycine max (soybean) ]

Gene ID: 100792278, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100792278
Gene description
agamous-like MADS-box protein AGL18
Locus tag
GLYMA_02G185500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100792278 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (34757331..34762151, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (32929467..32934272, complement)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene NADPH-dependent thioredoxin reductase 3 Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene uncharacterized mitochondrial protein AtMg00810-like Neighboring gene F-box protein At1g70590-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Alterations in the transcriptome of soybean in response to enhanced somatic embryogenesis promoted by orthologs of Agamous-like15 and Agamous-like18. Zheng Q, et al. Plant Physiol, 2014 Mar. PMID 24481137, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    34757331..34762151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041007228.1 → XP_040863162.1  agamous-like MADS-box protein AGL18 isoform X2

    Conserved Domains (2) summary
    PRK12704
    Location:55 → 140
    PRK12704; phosphodiesterase; Provisional
    cd00265
    Location:2 → 60
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  2. XM_006575196.4 → XP_006575259.1  agamous-like MADS-box protein AGL18 isoform X1

    See identical proteins and their annotated locations for XP_006575259.1

    UniProtKB/TrEMBL
    A0A0R0L5A9, I1JGA3
    Conserved Domains (2) summary
    cd00265
    Location:2 → 76
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:99 → 174
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version

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