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LOC100808073 probable zinc metalloprotease EGY1, chloroplastic [ Glycine max (soybean) ]

Gene ID: 100808073, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100808073
Gene description
probable zinc metalloprotease EGY1, chloroplastic
Locus tag
GLYMA_19G116000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100808073 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (37609125..37616229, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (37135950..37142972, complement)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102668040 Neighboring gene glycinamide ribonucleotide transformylase Neighboring gene uncharacterized LOC100808605 Neighboring gene 50S ribosomal protein L25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable zinc metalloprotease EGY1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    37609125..37616229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003553996.5 → XP_003554044.1  probable zinc metalloprotease EGY1, chloroplastic

    See identical proteins and their annotated locations for XP_003554044.1

    UniProtKB/TrEMBL
    I1N8C6, I1N8C7
    Conserved Domains (1) summary
    cd06160
    Location:261 → 484
    S2P-M50_like_2; Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the ...
Nucleotide Protein
Heading Accession and Version

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