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LOC100809143 50S ribosomal protein L25 [ Glycine max (soybean) ]

Gene ID: 100809143, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100809143
Gene description
50S ribosomal protein L25
Locus tag
GLYMA_19G116200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100809143 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (37631956..37635329)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (37158857..37162323)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene probable zinc metalloprotease EGY1, chloroplastic Neighboring gene uncharacterized LOC100808605 Neighboring gene BTB/POZ and MATH domain-containing protein 4 Neighboring gene uncharacterized LOC102666810

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5S rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
50S ribosomal protein L25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    37631956..37635329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003553998.4 → XP_003554046.1  50S ribosomal protein L25 isoform X1

    UniProtKB/TrEMBL
    I1N8C9
    Conserved Domains (1) summary
    PRK05618
    Location:51 → 252
    PRK05618; 50S ribosomal protein L25/general stress protein Ctc; Reviewed

  2. XM_006604196.4 → XP_006604259.1  50S ribosomal protein L25 isoform X2

    UniProtKB/TrEMBL
    I1N8D0
    Conserved Domains (1) summary
    PRK05618
    Location:51 → 245
    PRK05618; 50S ribosomal protein L25/general stress protein Ctc; Reviewed
Nucleotide Protein
Heading Accession and Version

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