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LOC100814442 ISWI chromatin-remodeling complex ATPase CHR11 [ Glycine max (soybean) ]

Gene ID: 100814442, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100814442
Gene description
ISWI chromatin-remodeling complex ATPase CHR11
Locus tag
GLYMA_17G023600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100814442 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
25
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 17 NC_038253.2 (1712775..1722145)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 17 NC_038253.1 (1714480..1723872)

Chromosome 17 - NC_038253.2Genomic Context describing neighboring genes Neighboring gene RING finger and CHY zinc finger domain-containing protein 1-like Neighboring gene uncharacterized LOC102664988 Neighboring gene uncharacterized LOC102663607 Neighboring gene monothiol glutaredoxin-S10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ISWI chromatin-remodeling complex ATPase CHR11
Names
putative chromatin-remodeling complex ATPase chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038253.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    1712775..1722145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003550124.4 → XP_003550172.1  ISWI chromatin-remodeling complex ATPase CHR11

    UniProtKB/TrEMBL
    I1MRF4
    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1044
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein
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