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LOC100822641 probable chromatin-remodeling complex ATPase chain [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100822641, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100822641
Gene description
probable chromatin-remodeling complex ATPase chain
Locus tag
BRADI_2g35740v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100822641 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (35923928..35932103, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (36179281..36187411, complement)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene double-stranded RNA-binding protein 2 Neighboring gene uncharacterized LOC112270545 Neighboring gene uncharacterized LOC106865975

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable chromatin-remodeling complex ATPase chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    35923928..35932103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003568876.4 → XP_003568924.1  probable chromatin-remodeling complex ATPase chain

    UniProtKB/TrEMBL
    A0A2K2DC14, I1HLS7
    Conserved Domains (6) summary
    PLN03142
    Location:66 → 1086
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:249 → 388
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:880 → 924
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00271
    Location:545 → 644
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:793 → 865
    HAND; HAND
    pfam09111
    Location:934 → 1043
    SLIDE; SLIDE
Nucleotide Protein Strain
Heading Accession and Version

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