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LOC100828863 recQ-mediated genome instability protein 1 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100828863, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100828863
Gene description
recQ-mediated genome instability protein 1
Locus tag
BRADI_5g08320v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100828863 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 5 NC_016135.3 (11004979..11016638, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 5 NC_016135.2 (10949555..10961171, complement)

Chromosome 5 - NC_016135.3Genomic Context describing neighboring genes Neighboring gene 11-beta-hydroxysteroid dehydrogenase 1B Neighboring gene 11-beta-hydroxysteroid dehydrogenase 1B Neighboring gene uncharacterized LOC106865464 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene uncharacterized LOC112269442

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RecQ family helicase-topoisomerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
recQ-mediated genome instability protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016135.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    11004979..11016638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024456411.1 → XP_024312179.1  recQ-mediated genome instability protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K2CFW9
    Conserved Domains (2) summary
    pfam08585
    Location:300 → 463
    RMI1_N; RecQ mediated genome instability protein
    pfam16099
    Location:656 → 794
    RMI1_C; Recq-mediated genome instability protein 1, C-terminal OB-fold

  2. XM_024456412.1 → XP_024312180.1  recQ-mediated genome instability protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K2CFX6
    Conserved Domains (2) summary
    pfam08585
    Location:300 → 463
    RMI1_N; RecQ mediated genome instability protein
    pfam16099
    Location:682 → 808
    RMI1_C; Recq-mediated genome instability protein 1, C-terminal OB-fold

  3. XM_024456410.1 → XP_024312178.1  recQ-mediated genome instability protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K2CFW9, A0A2K2CFX4
    Conserved Domains (2) summary
    pfam08585
    Location:300 → 463
    RMI1_N; RecQ mediated genome instability protein
    pfam16099
    Location:682 → 820
    RMI1_C; Recq-mediated genome instability protein 1, C-terminal OB-fold

  4. XM_014895438.2 → XP_014750924.1  recQ-mediated genome instability protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K2CFW9, A0A2K2CFX4
    Conserved Domains (2) summary
    pfam08585
    Location:300 → 463
    RMI1_N; RecQ mediated genome instability protein
    pfam16099
    Location:682 → 820
    RMI1_C; Recq-mediated genome instability protein 1, C-terminal OB-fold

  5. XM_024456414.1 → XP_024312182.1  recQ-mediated genome instability protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A2K2CFX1, A0A2K2CFX6
    Conserved Domains (2) summary
    pfam08585
    Location:300 → 463
    RMI1_N; RecQ mediated genome instability protein
    pfam16099
    Location:682 → 789
    RMI1_C; Recq-mediated genome instability protein 1, C-terminal OB-fold

  6. XM_024456413.1 → XP_024312181.1  recQ-mediated genome instability protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A2K2CFX6, A0A2K2CFX8
    Conserved Domains (2) summary
    pfam08585
    Location:300 → 463
    RMI1_N; RecQ mediated genome instability protein
    pfam16099
    Location:682 → 789
    RMI1_C; Recq-mediated genome instability protein 1, C-terminal OB-fold
Nucleotide Protein Strain
Heading Accession and Version

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