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SETP15 SET pseudogene 15 [ Homo sapiens (human) ]

Gene ID: 100856877, updated on 17-Sep-2024

Summary

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Official Symbol
SETP15provided by HGNC
Official Full Name
SET pseudogene 15provided by HGNC
Primary source
HGNC:HGNC:42934
See related
AllianceGenome:HGNC:42934
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SETP15 in Genome Data Viewer
Location:
Xp22.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (15917475..15917847)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (15500406..15500778)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (15935598..15935970)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20674 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:15872970-15873574 Neighboring gene adaptor related protein complex 1 subunit sigma 2 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:15926789-15927701 Neighboring gene RNA, U5F small nuclear 7, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chrX:15961157-15961364 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:16060812-16061354 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:16065714-16066214 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:16094875-16095376 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29452 Neighboring gene Sharpr-MPRA regulatory region 9466 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20677 Neighboring gene MAGEB17 antisense RNA 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:16178523-16179722 Neighboring gene gastrin releasing peptide receptor Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:16186339-16187224 Neighboring gene MAGE family member B17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_031903.2 

    Range
    101..473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    15917475..15917847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    15500406..15500778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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