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PTP4A1P3 PTP4A1 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 100861469, updated on 17-Sep-2024

Summary

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Official Symbol
PTP4A1P3provided by HGNC
Official Full Name
PTP4A1 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:41930
See related
Ensembl:ENSG00000226254 AllianceGenome:HGNC:41930
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See PTP4A1P3 in Genome Data Viewer
Location:
7q21.13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (91107391..91107788)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (92355270..92355667)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (90736706..90737103)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 14 Neighboring gene TVP23C pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26248 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26249 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26251 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:90394025-90394596 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:90395797-90396298 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:90396299-90396798 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26252 Neighboring gene uncharacterized LOC124901694 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:90661021-90661555 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26253 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:90690954-90691454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:90691455-90691955 Neighboring gene VISTA enhancer hs1627 Neighboring gene VISTA enhancer hs1628 Neighboring gene VISTA enhancer hs1633 Neighboring gene VISTA enhancer hs1631 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26254 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18362 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18363 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18364 Neighboring gene uncharacterized LOC124901695 Neighboring gene frizzled class receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The DNA sequence of human chromosome 7. Hillier LW, et al. Nature, 2003 Jul 10. PMID 12853948

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • protein tyrosine phosphatase type IVA, member 1 pseudogene 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032021.1 

    Range
    101..498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    91107391..91107788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    92355270..92355667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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