U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Rn28s 28S ribosomal RNA [ Rattus norvegicus (Norway rat) ]

Gene ID: 100861535, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
Rn28sprovided by RGD
Full Name
28S ribosomal RNAprovided by RGD
Primary source
RGD:5687329
See related
EnsemblRapid:ENSRNOG00000074582 AllianceGenome:RGD:5687329
Gene type
rRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
The sequences coding for ribosomal RNAs are present as rDNA repeating units distributed on the short arms of chromosomes 3, 11, and 12. A 45S rRNA which serves as the precursor for the 18S, 5.8S and 28S rRNA, is transcribed from each rDNA unit by RNA polymerase I. The number of rDNA repeating units varies between individuals and from chromosome to chromosome, although usually 30 to 40 repeats are found on each chromosome. These ribosomal repeating units are not currently annotated on the reference genome. This gene represents the portion of one rDNA repeat which encodes the 28S RNA. [provided by RefSeq, Feb 2012]
Expression
Biased expression in Spleen (RPKM 22475.4), Liver (RPKM 21628.5) and 9 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Rn28s in Genome Data Viewer
Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (481241..486046, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) Unplaced Scaffold NW_023637831.1 (85562..90364)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (46647095..46655563)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480937 Neighboring gene uncharacterized LOC134481046 Neighboring gene 5.8S ribosomal RNA Neighboring gene 18S ribosomal RNA Neighboring gene 45S pre-ribosomal RNA like 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Primary and secondary structure of rat 28 S ribosomal RNA. Hadjiolov AA, et al. Nucleic Acids Res, 1984 Apr 25. PMID 6328433, Free PMC Article
  2. The nucleotide sequence of a rat 18 S ribosomal ribonucleic acid gene and a proposal for the secondary structure of 18 S ribosomal ribonucleic acid. Chan YL, et al. J Biol Chem, 1984 Jan 10. PMID 6323401
  3. The structure of rat 28S ribosomal ribonucleic acid inferred from the sequence of nucleotides in a gene. Chan YL, et al. Nucleic Acids Res, 1983 Nov 25. PMID 6316273, Free PMC Article
  4. Nucleotide sequence of the region between the 18S rRNA sequence and the 28S rRNA sequence of rat ribosomal DNA. Subrahmanyam CS, et al. Nucleic Acids Res, 1982 Jun 25. PMID 6287418, Free PMC Article
  5. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Other Names

  • 28S RNA

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046246.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000011
    Related
    ENSRNOT00000108683.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    481241..486046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials