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LINC00566 long intergenic non-protein coding RNA 566 [ Homo sapiens (human) ]

Gene ID: 100861547, updated on 12-Sep-2024

Summary

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Official Symbol
LINC00566provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 566provided by HGNC
Primary source
HGNC:HGNC:43710
See related
Ensembl:ENSG00000261498 AllianceGenome:HGNC:43710
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
13q12.12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (24331450..24337121)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (23538530..23544218)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (24905588..24911259)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene C1q and TNF related 9 Neighboring gene cell cycle exit and neuronal differentiation protein 1-like Neighboring gene PCOTH pseudogene 1 Neighboring gene cell cycle exit and neuronal differentiation 1 pseudogene 2 Neighboring gene NUS1 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 8397 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:24965836-24966558 Neighboring gene CYCS pseudogene 33 Neighboring gene NANOG hESC enhancer GRCh37_chr13:24993751-24994256 Neighboring gene poly(ADP-ribose) polymerase family member 4 Neighboring gene OCT4 hESC enhancer GRCh37_chr13:25018880-25019381 Neighboring gene uncharacterized LOC105370117 Neighboring gene Sharpr-MPRA regulatory region 4719 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5178

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131903.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL359763, BC038727
    Related
    ENST00000561557.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    24331450..24337121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    23538530..23544218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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