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Potefam3b POTE ankyrin domain family member 3B [ Mus musculus (house mouse) ]

Gene ID: 100861668, updated on 2-Nov-2024

Summary

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Official Symbol
Potefam3bprovided by MGI
Official Full Name
POTE ankyrin domain family member 3Bprovided by MGI
Primary source
MGI:MGI:5434474
See related
Ensembl:ENSMUSG00000095294 AllianceGenome:MGI:5434474
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pote3b; Gm21119
Summary
Orthologous to human POTEJ (POTE ankyrin domain family member J). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 18.5) and frontal lobe adult (RPKM 0.8) See more
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Genomic context

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See Potefam3b in Genome Data Viewer
Location:
8 A2; 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (21154420..21186788)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20614404..20646749)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cadherin 11 pseudogene Neighboring gene 40S ribosomal protein S7 pseudogene Neighboring gene predicted gene, 20946 Neighboring gene defensin, alpha pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270553.1 → NP_001257482.1  ankyrin repeat domain-containing protein 7-like

    See identical proteins and their annotated locations for NP_001257482.1

    Status: VALIDATED

    Source sequence(s)
    AC240744, AK076593
    Consensus CDS
    CCDS57608.1
    UniProtKB/TrEMBL
    B9EK96, Q8C646
    Related
    ENSMUSP00000137434.2, ENSMUST00000178438.3
    Conserved Domains (4) summary
    cd00204
    Location:79 → 203
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:89 → 180
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:54 → 105
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:86 → 115
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    21154420..21186788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242034.4 → XP_011240336.1  ankyrin repeat domain-containing protein 7-like isoform X1

    UniProtKB/TrEMBL
    Q9D5C0
    Conserved Domains (2) summary
    sd00045
    Location:86 → 115
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:89 → 180
    Ank_2; Ankyrin repeats (3 copies)

RNA

  1. XR_003947210.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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