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Spata31f1c spermatogenesis associated 31 subfamily F member 1C [ Mus musculus (house mouse) ]

Gene ID: 100862261, updated on 2-Nov-2024

Summary

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Official Symbol
Spata31f1cprovided by MGI
Official Full Name
spermatogenesis associated 31 subfamily F member 1Cprovided by MGI
Primary source
MGI:MGI:5434953
See related
Ensembl:ENSMUSG00000093996 AllianceGenome:MGI:5434953
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam205a; Gm21598; Fam205a3; Spata31f1-3
Summary
Predicted to be located in membrane. Orthologous to several human genes including SPATA31F1 (SPATA31 subfamily F member 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 14.2), cortex adult (RPKM 3.3) and 6 other tissues See more
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Genomic context

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See Spata31f1c in Genome Data Viewer
Location:
4 A5; 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (42294525..42324072)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (42294525..42324072)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene small inducible cytokine A19, pseudogene 1 Neighboring gene predicted gene 21980 Neighboring gene predicted gene, 21953 Neighboring gene predicted gene, 46892 Neighboring gene protein FAM205A-like Neighboring gene predicted gene, 21586

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
spermatogenesis-associated protein 31F1C; protein SPATA31F1-3
Names
family with sequence similarity 205, member A3
protein FAM205A
protein FAM205A-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357589.1 → NP_001344518.1  spermatogenesis-associated protein 31F1C

    Status: VALIDATED

    Source sequence(s)
    AI429787, AI552279, AL844494
    Conserved Domains (2) summary
    pfam14650
    Location:335 → 520
    FAM75; FAM75 family
    pfam15371
    Location:3 → 57
    DUF4599; Domain of unknown function (DUF4599)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    42294525..42324072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003688793.5 → XP_003688841.1  protein SPATA31F1-3 isoform X1

    See identical proteins and their annotated locations for XP_003688841.1

    UniProtKB/Swiss-Prot
    A2APU8, C0HKD1, C0HKD2, C0HKD3
    Related
    ENSMUSP00000137159.2, ENSMUST00000178192.3
    Conserved Domains (3) summary
    pfam14650
    Location:416 → 601
    FAM75; FAM75 family
    pfam15371
    Location:52 → 138
    DUF4599; Domain of unknown function (DUF4599)
    pfam15402
    Location:1093 → 1246
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

  2. XM_006538394.1 → XP_006538457.1  protein SPATA31F1-3 isoform X2

    See identical proteins and their annotated locations for XP_006538457.1

    Conserved Domains (3) summary
    pfam14650
    Location:397 → 582
    FAM75; FAM75 family
    pfam15371
    Location:45 → 119
    DUF4599; Domain of unknown function (DUF4599)
    pfam15402
    Location:1074 → 1227
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0HKD2.1 GenPept UniProtKB/Swiss-Prot:C0HKD2

Gene LinkOut

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