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RNA5SP188 RNA, 5S ribosomal pseudogene 188 [ Homo sapiens (human) ]

Gene ID: 100873450, updated on 17-Sep-2024

Summary

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Official Symbol
RNA5SP188provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 188provided by HGNC
Primary source
HGNC:HGNC:43088
See related
AllianceGenome:HGNC:43088
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S188
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Genomic context

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See RNA5SP188 in Genome Data Viewer
Location:
5q21.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (102131118..102131135, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (102639217..102639234, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (101466822..101466839, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379102 Neighboring gene RNA, 7SL, cytoplasmic 802, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:100994577-100995077 Neighboring gene NANOG hESC enhancer GRCh37_chr5:101054370-101054962 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:101118310-101119062 Neighboring gene olfactory receptor family 7 subfamily H member 2 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:101467333-101467904 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:101517472-101518671 Neighboring gene MPRA-validated peak5379 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22853 Neighboring gene solute carrier organic anion transporter family member 4C1 Neighboring gene RN7SK pseudogene 68

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 188

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033683.1 

    Range
    101..118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    102131118..102131135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    102639217..102639234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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