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RNA5SP189 RNA, 5S ribosomal pseudogene 189 [ Homo sapiens (human) ]

Gene ID: 100873451, updated on 17-Sep-2024

Summary

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Official Symbol
RNA5SP189provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 189provided by HGNC
Primary source
HGNC:HGNC:43089
See related
Ensembl:ENSG00000201790 AllianceGenome:HGNC:43089
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S189
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Genomic context

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See RNA5SP189 in Genome Data Viewer
Location:
5q21.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (105922994..105923108, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (106427256..106427370, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (105258695..105258809, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene RAB9B, member RAS oncogene family pseudogene 1 Neighboring gene MPRA-validated peak5386 silencer Neighboring gene uncharacterized LOC105379110 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:104727399-104728228 Neighboring gene MPRA-validated peak5387 silencer Neighboring gene Sharpr-MPRA regulatory region 1662 Neighboring gene NANOG hESC enhancer GRCh37_chr5:105275636-105276417 Neighboring gene MPRA-validated peak5393 silencer Neighboring gene MPRA-validated peak5394 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:105590357-105590959 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:105758794-105759294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105766194-105766694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:105766695-105767195 Neighboring gene RUN and FYVE domain containing 3 pseudogene Neighboring gene zinc finger protein 736 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 5S ribosomal 189

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033685.1 

    Range
    101..215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    105922994..105923108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    106427256..106427370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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