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RNA5SP214 RNA, 5S ribosomal pseudogene 214 [ Homo sapiens (human) ]

Gene ID: 100873474, updated on 17-Sep-2024

Summary

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Official Symbol
RNA5SP214provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 214provided by HGNC
Primary source
HGNC:HGNC:43114
See related
Ensembl:ENSG00000200248 AllianceGenome:HGNC:43114
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S214
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Genomic context

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See RNA5SP214 in Genome Data Viewer
Location:
6q22.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (117060682..117060799)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (118244501..118244618)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (117381845..117381962)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RFX6 promoter region Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:117198416-117199374 Neighboring gene RFX6 prostate cancer risk allelic enhancer Neighboring gene regulatory factor X6 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:117246147-117247346 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25000 Neighboring gene ribosomal protein S29 pseudogene 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:117393735-117394283 Neighboring gene NANOG hESC enhancer GRCh37_chr6:117407945-117408537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:117431508-117432046 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:117432047-117432583 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:117565651-117566217 Neighboring gene Sharpr-MPRA regulatory region 7973 Neighboring gene uncharacterized LOC105377964 Neighboring gene vestigial like family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 214

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033284.1 

    Range
    101..218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    117060682..117060799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    118244501..118244618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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