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RNA5SP348 RNA, 5S ribosomal pseudogene 348 [ Homo sapiens (human) ]

Gene ID: 100873610, updated on 17-Sep-2024

Summary

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Official Symbol
RNA5SP348provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 348provided by HGNC
Primary source
HGNC:HGNC:43248
See related
AllianceGenome:HGNC:43248
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S348
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Genomic context

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See RNA5SP348 in Genome Data Viewer
Location:
11q22.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (104252579..104252615)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (104256885..104256921)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (104123307..104123343)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak1441 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5454 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5455 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5456 Neighboring gene PDGFD downstream neighbor Neighboring gene platelet derived growth factor D Neighboring gene ReSE screen-validated silencer GRCh37_chr11:103854885-103855078 Neighboring gene DNA damage inducible 1 homolog 1 Neighboring gene uncharacterized LOC102723879 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:104208910-104210109 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:104322360-104323559 Neighboring gene long intergenic non-protein coding RNA 2552

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 348

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033493.1 

    Range
    101..137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    104252579..104252615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    104256885..104256921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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