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RNU1-18P RNA, U1 small nuclear 18, pseudogene [ Homo sapiens (human) ]

Gene ID: 100873815, updated on 17-Sep-2024

Summary

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Official Symbol
RNU1-18Pprovided by HGNC
Official Full Name
RNA, U1 small nuclear 18, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:41944
See related
Ensembl:ENSG00000199932 AllianceGenome:HGNC:41944
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU1-18P in Genome Data Viewer
Location:
6q22.31
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (122211648..122211811)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (123399782..123399945)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (122532794..122532957)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene LSM14A, SCD6 homolog A (S. cerevisiae) pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:122050901-122051634 Neighboring gene uncharacterized LOC105377979 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:122144457-122145097 Neighboring gene Sharpr-MPRA regulatory region 15426 Neighboring gene Sharpr-MPRA regulatory region 11019 Neighboring gene high mobility group box 3 pseudogene 18 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:122253710-122254305 Neighboring gene Sharpr-MPRA regulatory region 11815 Neighboring gene NANOG hESC enhancer GRCh37_chr6:122714378-122714996 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17514 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:122721093-122721592 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25020 Neighboring gene heat shock transcription factor 2 Neighboring gene serine incorporator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032597.1 

    Range
    101..264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    122211648..122211811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    123399782..123399945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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