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CNTN4-AS2 CNTN4 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100873976, updated on 10-Oct-2023

Summary

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Official Symbol
CNTN4-AS2provided by HGNC
Official Full Name
CNTN4 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:39986
See related
Ensembl:ENSG00000227588 AllianceGenome:HGNC:39986
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CNTN4-AS2 in Genome Data Viewer
Location:
3p26.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (2110409..2144241, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (2104313..2138119, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (2152093..2185925, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr3:2136506-2137113 Neighboring gene uncharacterized LOC124909338 Neighboring gene RN7SK pseudogene 144 Neighboring gene contactin 4 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68491 Neighboring gene meiotic recombination hotspot T Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68954 Neighboring gene histidine triad nucleotide binding protein 2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19335 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19336 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:2806697-2807249 Neighboring gene NANOG hESC enhancer GRCh37_chr3:2812162-2812685 Neighboring gene uncharacterized LOC105376926

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CNTN4 antisense RNA 2 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046555.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087427, BE041831
    Related
    ENST00000447256.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    2110409..2144241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    2104313..2138119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases