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PCYT1B-AS1 PCYT1B antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874088, updated on 10-Oct-2023

Summary

Official Symbol
PCYT1B-AS1provided by HGNC
Official Full Name
PCYT1B antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40431
See related
Ensembl:ENSG00000236836 AllianceGenome:HGNC:40431
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See PCYT1B-AS1 in Genome Data Viewer
Location:
Xp22.11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (24650073..24658237)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (24234365..24242531)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (24668190..24676354)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase kinase 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29505 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:24546061-24546668 Neighboring gene SNRPE pseudogene 9 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:24546669-24547275 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20720 Neighboring gene phosphate cytidylyltransferase 1B, choline Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29506 Neighboring gene H2B histone pseudogene 7 Neighboring gene uncharacterized LOC124905262 Neighboring gene ribosomal protein L23 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046638.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079168
    Related
    ENST00000432626.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    24650073..24658237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    24234365..24242531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)