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HAO2-IT1 HAO2 intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 100874270, updated on 17-Sep-2024

Summary

Official Symbol
HAO2-IT1provided by HGNC
Official Full Name
HAO2 intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:41342
See related
Ensembl:ENSG00000230921 AllianceGenome:HGNC:41342
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See HAO2-IT1 in Genome Data Viewer
Location:
1p12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (119368946..119370331)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (119382145..119383530)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (119911569..119912954)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene WARS2 antisense RNA 1 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1591 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:119836037-119836616 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:119836617-119837196 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:119837197-119837776 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:119868596-119869458 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:119869459-119870319 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:119870320-119871181 Neighboring gene long intergenic non-protein coding RNA 1780 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:119883491-119884293 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:119884294-119885095 Neighboring gene RNA, U1 small nuclear 75, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1593 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:119900810-119902009 Neighboring gene hydroxyacid oxidase 2 Neighboring gene HSD3B2 5' regulatory region Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 74

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046780.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139346
    Related
    ENST00000419144.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    119368946..119370331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    119382145..119383530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)