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Iqck IQ motif containing K [ Rattus norvegicus (Norway rat) ]

Gene ID: 100909537, updated on 2-Nov-2024

Summary

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Symbol
Iqckprovided by RGD
Full Name
IQ motif containing Kprovided by RGD
Primary source
RGD:6502881
See related
EnsemblRapid:ENSRNOG00000036758 AllianceGenome:RGD:6502881
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human IQCK (IQ motif containing K). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 107.1), Heart (RPKM 37.1) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Iqck in Genome Data Viewer
Location:
1q35
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (182630678..182748325)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (173199308..173316982)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (188571930..188690184)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene VPS35 endosomal protein sorting factor like Neighboring gene small nucleolar RNA SNORA24 Neighboring gene small nucleolar RNA SNORA44 Neighboring gene lysine-rich nucleolar protein 1 Neighboring gene uncharacterized LOC134485172 Neighboring gene uncharacterized LOC102550985 Neighboring gene G protein-coupled receptor, class C, group 5, member B Neighboring gene uncharacterized LOC134485173 Neighboring gene G protein-coupled receptor 139

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
IQ domain-containing protein K
Names
IQ domain-containing protein K-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401714.1 → NP_001388643.1  IQ domain-containing protein K

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    Related
    ENSRNOP00000080063.2, ENSRNOT00000105879.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    182630678..182748325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006230149.5 → XP_006230211.1  IQ domain-containing protein K isoform X1

    See identical proteins and their annotated locations for XP_006230211.1

    UniProtKB/TrEMBL
    A0A8I5ZNX3, D3ZTH1
    Related
    ENSRNOP00000051971.5, ENSRNOT00000055096.6
    Conserved Domains (1) summary
    pfam00612
    Location:218 → 235
    IQ; IQ calmodulin-binding motif

  2. XM_063283526.1 → XP_063139596.1  IQ domain-containing protein K isoform X8

  3. XM_063283413.1 → XP_063139483.1  IQ domain-containing protein K isoform X6

  4. XM_039101165.2 → XP_038957093.1  IQ domain-containing protein K isoform X4

  5. XM_006230150.4 → XP_006230212.1  IQ domain-containing protein K isoform X2

    See identical proteins and their annotated locations for XP_006230212.1

  6. XM_063283355.1 → XP_063139425.1  IQ domain-containing protein K isoform X5

  7. XM_063283313.1 → XP_063139383.1  IQ domain-containing protein K isoform X3

  8. XM_063283469.1 → XP_063139539.1  IQ domain-containing protein K isoform X7

  9. XM_039101167.2 → XP_038957095.1  IQ domain-containing protein K isoform X7

    Conserved Domains (1) summary
    cd22307
    Location:120 → 137
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif

  10. XM_063283495.1 → XP_063139565.1  IQ domain-containing protein K isoform X7

RNA

  1. XR_010064577.1 RNA Sequence

  2. XR_010064593.1 RNA Sequence

  3. XR_005499407.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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