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Syncrip-ps2 synaptotagmin binding, cytoplasmic RNA interacting protein, pseudogene 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100910069, updated on 17-Aug-2024

Summary

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Official Symbol
Syncrip-ps2provided by RGD
Official Full Name
synaptotagmin binding, cytoplasmic RNA interacting protein, pseudogene 2provided by RGD
Primary source
RGD:6500498
See related
AllianceGenome:RGD:6500498
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 211.2), Spleen (RPKM 166.0) and 9 other tissues See more
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Genomic context

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See Syncrip-ps2 in Genome Data Viewer
Location:
8q31
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (98349672..98378405, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (89469798..89496534, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (96238266..96329246, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 14 Neighboring gene myosin light polypeptide 6-like Neighboring gene synaptotagmin binding, cytoplasmic RNA interacting protein Neighboring gene small nucleolar RNA SNORD50 Neighboring gene zinc finger protein 949 Neighboring gene tripartite motif-containing 43A Neighboring gene small nucleolar RNA SNORD50

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein Q-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    98349672..98378405 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063266429.1 → XP_063122499.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X1

  2. XM_063266430.1 → XP_063122500.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X1

  3. XM_063266428.1 → XP_063122498.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X1

  4. XM_063266433.1 → XP_063122503.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X4

  5. XM_063266432.1 → XP_063122502.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X3

  6. XM_063266431.1 → XP_063122501.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X2

  7. XM_063266436.1 → XP_063122506.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X5

  8. XM_063266434.1 → XP_063122504.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X5

RNA

  1. XR_010054445.1 RNA Sequence

  2. XR_010054446.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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