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LOC100910558 uncharacterized LOC100910558 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100910558, updated on 13-Apr-2024

Summary

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Symbol
LOC100910558provided by RGD
Full Name
uncharacterized LOC100910558provided by RGD
Primary source
RGD:6497980
See related
AllianceGenome:RGD:6497980
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564859
Expression
Biased expression in Heart (RPKM 156.8), Adrenal (RPKM 103.1) and 9 other tissues See more
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Genomic context

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See LOC100910558 in Genome Data Viewer
Location:
5q31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (102022125..102060125)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (96976181..97014187)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (100650512..100688185)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene nuclear factor I/B Neighboring gene uncharacterized LOC134486945 Neighboring gene uncharacterized LOC134486946 Neighboring gene uncharacterized LOC102551858 Neighboring gene transfer RNA histidine (anticodon GUG) 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. HAfTs are novel lncRNA transcripts from aflatoxin exposure. Merrick BA, et al. PLoS One, 2018. PMID 29351317, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110678.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    FM040412, FM052678, FM089179, FM099320, JAXUCZ010000005

  2. NR_110679.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two internal exons and uses an alternate splice site in the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    FM040412, FM052678, FM089179, FM099320, FM110444, JAXUCZ010000005

  3. NR_110680.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two internal exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    FM040412, FM089179, FM099320, JAXUCZ010000005

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    102022125..102060125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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