U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Chchd2 coiled-coil-helix-coiled-coil-helix domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100910788, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Chchd2provided by RGD
Official Full Name
coiled-coil-helix-coiled-coil-helix domain containing 2provided by RGD
Primary source
RGD:6496638
See related
EnsemblRapid:ENSRNOG00000065713 AllianceGenome:RGD:6496638
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Chchd2l1
Summary
Predicted to enable DNA-binding transcription factor binding activity and sequence-specific DNA binding activity. Predicted to be involved in several processes, including cellular response to oxidative stress; positive regulation of transcription by RNA polymerase II; and regulation of cellular response to hypoxia. Predicted to be located in mitochondrial intermembrane space and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Chchd2 in Genome Data Viewer
Location:
12q13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (32464847..32470871)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (26828738..26834762)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (30443343..30446075)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED-type containing 5 Neighboring gene MLV-related proviral Env polyprotein-like Neighboring gene protein NYNRIN-like Neighboring gene phosphorylase kinase catalytic subunit gamma 1 Neighboring gene sulfatase modifying factor 2 Neighboring gene uncharacterized LOC120095933 Neighboring gene chaperonin containing TCP1 subunit 6A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor binding ISO
Inferred from Sequence Orthology
more info
  
enables sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in cellular response to oxidative stress ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of positive regulation of mitochondrial ATP synthesis coupled electron transport ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of cellular response to hypoxia ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of generation of precursor metabolites and energy ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in mitochondrial intermembrane space ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
coiled-coil-helix-coiled-coil-helix domain-containing protein 2
Names
coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 1
coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like
coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like
NP_001385947.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399018.1 → NP_001385947.1  coiled-coil-helix-coiled-coil-helix domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    Q5BJB3
    Related
    ENSRNOP00000085358.1, ENSRNOT00000105914.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    32464847..32470871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools