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LOC100911221 uncharacterized LOC100911221 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100911221, updated on 17-Aug-2024

Summary

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Symbol
LOC100911221provided by RGD
Full Name
uncharacterized LOC100911221provided by RGD
Primary source
RGD:6494360
See related
AllianceGenome:RGD:6494360
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 59.5), Lung (RPKM 29.9) and 9 other tissues See more
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Genomic context

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See LOC100911221 in Genome Data Viewer
Location:
5q33
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (115013255..115064929)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (109897523..109949196)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (114014532..114066203)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102921 Neighboring gene Jun proto-oncogene, AP-1 transcription factor subunit Neighboring gene uncharacterized LOC102550339 Neighboring gene uncharacterized LOC134486951 Neighboring gene uncharacterized LOC120102923

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    115013255..115064929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010051907.1 RNA Sequence

  2. XR_010051904.1 RNA Sequence

  3. XR_010051908.1 RNA Sequence

  4. XR_010051894.1 RNA Sequence

  5. XR_010051905.1 RNA Sequence

  6. XR_010051899.1 RNA Sequence

  7. XR_010051898.1 RNA Sequence

  8. XR_010051902.1 RNA Sequence

  9. XR_010051900.1 RNA Sequence

  10. XR_010051901.1 RNA Sequence

  11. XR_010051903.1 RNA Sequence

  12. XR_010051906.1 RNA Sequence

  13. XR_010051895.1 RNA Sequence

  14. XR_010051896.1 RNA Sequence

  15. XR_010051897.1 RNA Sequence

  16. XR_010051885.1 RNA Sequence

  17. XR_010051912.1 RNA Sequence

  18. XR_010051917.1 RNA Sequence

  19. XR_010051892.1 RNA Sequence

  20. XR_010051870.1 RNA Sequence

  21. XR_010051916.1 RNA Sequence

  22. XR_010051887.1 RNA Sequence

  23. XR_010051909.1 RNA Sequence

  24. XR_010051877.1 RNA Sequence

  25. XR_010051872.1 RNA Sequence

  26. XR_010051886.1 RNA Sequence

  27. XR_010051871.1 RNA Sequence

  28. XR_010051888.1 RNA Sequence

  29. XR_010051913.1 RNA Sequence

  30. XR_010051883.1 RNA Sequence

  31. XR_010051873.1 RNA Sequence

  32. XR_010051891.1 RNA Sequence

  33. XR_010051875.1 RNA Sequence

  34. XR_010051878.1 RNA Sequence

  35. XR_010051876.1 RNA Sequence

  36. XR_010051879.1 RNA Sequence

  37. XR_010051889.1 RNA Sequence

  38. XR_010051880.1 RNA Sequence

  39. XR_010051869.1 RNA Sequence

  40. XR_010051874.1 RNA Sequence

  41. XR_010051893.1 RNA Sequence

  42. XR_010051915.1 RNA Sequence

  43. XR_010051914.1 RNA Sequence

  44. XR_010051881.1 RNA Sequence

  45. XR_010051884.1 RNA Sequence

  46. XR_010051890.1 RNA Sequence

  47. XR_010051910.1 RNA Sequence

  48. XR_010051911.1 RNA Sequence

  49. XR_010051882.1 RNA Sequence

Nucleotide Protein Strain
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