LOC100911248 crk-like protein-like [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: LOC100911248provided by RGD
Full Name: crk-like protein-likeprovided by RGD
Primary source: RGD:6493647
Gene type: protein coding
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Annotation information: Note: LOC100911248 appears to be a duplicate placement of Crkl (GeneID: 287942) on Rnor_6.0 that is not present on Rn_Celera (Annotation Release 105) and not supported by synteny in mouse and human. Gene neighbor LOC103693605 also appears to be a duplicate placement of Car15. BLASTing LOC100911248 XM_003751095.3 and Crkl NM_001008284.1 against the rat genome shows best hits to NC_005110.4 on Rnor_6.0 at locations where LOC100911248 and Crkl are annotated and to AC_000079.1 on Rn_Celera only at location where Crkl is annotated (Annotation Release 105). 2-seqence BLAST of Crkl NM_001008284.1 against LOC100911248 XM_003751095.3 shows high sequence identity (98% coverage, 99% identity). 2-sequence BLAST of LOC100911248 underlying component AC111344.6 against Rufy2 underlying component AABR07034750.1 shows 99% identity across a stretch of ~26 kb. [25 Mar 2015]
Expression: Biased expression in Thymus (RPKM 117.7), Spleen (RPKM 110.9) and 9 other tissues See more
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Annotation release	Status	Assembly	Chr	Location
106	latest, but not current	Rnor_6.0 (GCF_000001895.5)	11	NC_005110.4 (87778338..87815049, complement)

Genomic Sequence:: NC_005110.4 Chromosome 11 Reference Rnor_6.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016