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LOC100911938 butyrophilin subfamily 3 member A3-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100911938, discontinued on 23-Mar-2021
  • This record has been withdrawn by NCBI staff. This record represented a gene that is not currently annotated by NCBI.

Summary

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Symbol
LOC100911938provided by RGD
Full Name
butyrophilin subfamily 3 member A3-likeprovided by RGD
Primary source
RGD:6489741
Gene type
protein coding
RefSeq status
WITHDRAWN
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
DISCONTINUED: This record has been withdrawn by NCBI staff. This record represented a gene that is not currently annotated by NCBI.
Expression
Biased expression in Adrenal (RPKM 6.7), Spleen (RPKM 3.4) and 5 other tissues See more
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Genomic context

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See LOC100911938 in Genome Data Viewer
Location:
20p12
Exon count:
11
Annotation release Status Assembly Chr Location
106 latest, but not current Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (2813330..2825537, complement)
106 latest, but not current Rn_Celera (GCF_000002265.2) Unplaced Scaffold NW_001084989.1 (18003..30190)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

General protein information

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Names
butyrophilin subfamily 3 member A3-like
butyrophilin subfamily 1 member A1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005119.4 Reference Rnor_6.0 Primary Assembly

    Range
    2813330..2825537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017601844.1 → XP_017457333.1  

  2. XM_017601843.1 → XP_017457332.1  

Alternate Rn_Celera

Genomic

  1. NW_001084989.1 Alternate Rn_Celera

    Range
    18003..30190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017588475.1 → XP_017443964.1  

Gene LinkOut

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