U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100912604 spermidine synthase-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100912604, discontinued on 16-Mar-2021

Summary

Go to the top of the page Help
Symbol
LOC100912604provided by RGD
Full Name
spermidine synthase-likeprovided by RGD
Primary source
RGD:6485978
Gene type
protein coding
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 97.4), Muscle (RPKM 93.1) and 9 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100912604 in Genome Data Viewer
Location:
3p11
Exon count:
8
Annotation release Status Assembly Chr Location
106 latest, but not current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (14588818..14591980)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_005102.4 Chromosome 3 Reference Rnor_6.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

General protein information

Go to the top of the page Help
Names
spermidine synthase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005102.4 Reference Rnor_6.0 Primary Assembly

    Range
    14588818..14591980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003749458.2 → XP_003749506.1  

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.