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LOC100912988 uncharacterized LOC100912988 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100912988, discontinued on 16-Mar-2021
  • This record was withdrawn by the Rat Genome Database (RGD).

Summary

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Symbol
LOC100912988provided by RGD
Full Name
uncharacterized LOC100912988provided by RGD
Primary source
RGD:6485036
Gene type
ncRNA
RefSeq status
WITHDRAWN
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
DISCONTINUED: This record was withdrawn by the Rat Genome Database (RGD).
Expression
Biased expression in Lung (RPKM 38.6), Uterus (RPKM 33.4) and 9 other tissues See more
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Genomic context

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See LOC100912988 in Genome Data Viewer
Location:
12p12
Exon count:
3
Annotation release Status Assembly Chr Location
106 latest, but not current Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (3301541..3309681)
106 latest, but not current Rn_Celera (GCF_000002265.2) Unplaced Scaffold NW_001085456.1 (10030..12099, complement)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005111.4 Reference Rnor_6.0 Primary Assembly

    Range
    3301541..3309681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_358472.3 RNA Sequence

  2. XR_595215.2 RNA Sequence

  3. XR_595214.2 RNA Sequence

  4. XR_595217.2 RNA Sequence

  5. XR_358473.3 RNA Sequence

Alternate Rn_Celera

Genomic

  1. NW_001085456.1 Alternate Rn_Celera

    Range
    10030..12099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001835252.1 RNA Sequence

Gene LinkOut

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