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LINC00911 long intergenic non-protein coding RNA 911 [ Homo sapiens (human) ]

Gene ID: 100996280, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00911provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 911provided by HGNC
Primary source
HGNC:HGNC:48596
See related
Ensembl:ENSG00000259107 AllianceGenome:HGNC:48596
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.3) See more
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Genomic context

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Location:
14q31.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (85393879..85420074)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (79607560..79633749)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (85860223..85886418)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, C/D box 3 pseudogene 3 Neighboring gene long intergenic non-protein coding RNA 2329 Neighboring gene FLRT2 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr14:86035212-86035730 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:86041781-86042407 Neighboring gene fibronectin leucine rich transmembrane protein 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38044 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38047 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38246 Neighboring gene NANOG hESC enhancer GRCh37_chr14:86342091-86342659 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8831 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8832 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38309 Neighboring gene long intergenic non-protein coding RNA 2328 Neighboring gene long intergenic non-protein coding RNA 2316

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CTD-2128A3.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102737.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AA905171, AK131026

  2. NR_102738.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and contains an alternate 5' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AA905171, AI688626, AL133369
    Related
    ENST00000557155.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    85393879..85420074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    79607560..79633749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases