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LINC02802 long intergenic non-protein coding RNA 2802 [ Homo sapiens (human) ]

Gene ID: 100996732, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02802provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2802provided by HGNC
Primary source
HGNC:HGNC:54326
See related
Ensembl:ENSG00000232527 AllianceGenome:HGNC:54326
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in placenta (RPKM 2.6), spleen (RPKM 1.4) and 23 other tissues See more
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Genomic context

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See LINC02802 in Genome Data Viewer
Location:
1q21.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (144227030..144250352, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (143815799..143839063)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371206 Neighboring gene proton channel OTOP1-like Neighboring gene Sharpr-MPRA regulatory region 154 duplicate 2 Neighboring gene RNA, 5S ribosomal pseudogene 529 Neighboring gene D(1B) dopamine receptor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long Non-Coding RNA LINC02802 Regulates In Vitro Sprouting Angiogenesis by Sponging microRNA-486-5p. Rosano S, et al. Int J Mol Sci, 2022 Jan 31. PMID 35163581, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Long Non-Coding RNA LINC02802 Regulates In Vitro Sprouting Angiogenesis by Sponging microRNA-486-5p.
    Title: Long Non-Coding RNA LINC02802 Regulates In Vitro Sprouting Angiogenesis by Sponging microRNA-486-5p.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    144227030..144250352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_159162.6 RNA Sequence

    Related
    ENST00000826222.1

  2. XR_922021.4 RNA Sequence

    Related
    ENST00000826223.1

  3. XR_922018.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    143815799..143839063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_008486229.1 RNA Sequence

  2. XR_008486230.1 RNA Sequence

  3. XR_008486231.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials