U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01883 long intergenic non-protein coding RNA 1883 [ Homo sapiens (human) ]

Gene ID: 100996902, updated on 22-Oct-2024

Summary

Official Symbol
LINC01883provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1883provided by HGNC
Primary source
HGNC:HGNC:52702
See related
Ensembl:ENSG00000235009 AllianceGenome:HGNC:52702
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC01883 in Genome Data Viewer
Location:
2p22.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (38431294..38433573)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (38438182..38440463)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (38658436..38660715)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene atlastin GTPase 2 Neighboring gene MPRA-validated peak3663 silencer Neighboring gene MPRA-validated peak3664 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38578692-38579192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38580665-38581166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38581167-38581666 Neighboring gene H3K27ac hESC enhancers GRCh37_chr2:38603507-38604008 and GRCh37_chr2:38604009-38604508 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11372 Neighboring gene MPRA-validated peak3665 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:38624132-38624632 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:38633814-38634453 Neighboring gene uncharacterized LOC105374468 Neighboring gene Sharpr-MPRA regulatory region 2666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15606 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15607 Neighboring gene long intergenic non-protein coding RNA 2613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38703635-38704136 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11373 Neighboring gene ribosomal protein lateral stalk subunit P0 pseudogene 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11374 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15608 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:38763105-38763715 Neighboring gene Sharpr-MPRA regulatory region 10245 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:38779519-38779723 Neighboring gene heterogeneous nuclear ribonucleoprotein L like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11376 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11377

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146454.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA973088, AW082227
    Related
    ENST00000457385.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    38431294..38433573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    38438182..38440463
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)