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Gm15246 predicted gene 15246 [ Mus musculus (house mouse) ]

Gene ID: 101055907, updated on 17-Aug-2024

Summary

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Official Symbol
Gm15246provided by MGI
Official Full Name
predicted gene 15246provided by MGI
Primary source
MGI:MGI:3708120
See related
AllianceGenome:MGI:3708120
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16590
Expression
Biased expression in CNS E18 (RPKM 6.1), whole brain E14.5 (RPKM 4.8) and 13 other tissues See more
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Genomic context

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See Gm15246 in Genome Data Viewer
Location:
X F5; X 79.04 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (168103391..168153137)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (169320379..169370141)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 6 Neighboring gene amelogenin, X-linked Neighboring gene STARR-seq mESC enhancer starr_48282 Neighboring gene holocytochrome c synthetase Neighboring gene predicted gene 15245 Neighboring gene STARR-seq mESC enhancer starr_48283 Neighboring gene predicted gene, 25651 Neighboring gene midline 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Sexual differentiation in the developing mouse brain: contributions of sex chromosome genes. Wolstenholme JT, et al. Genes Brain Behav, 2013 Mar. PMID 23210685, Free PMC Article
  2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC101055907
Names
periphilin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001361166.1 → NP_001348095.1  uncharacterized protein LOC101055907

    Status: VALIDATED

    Source sequence(s)
    AL831750
    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    168103391..168153137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251178.2 → XP_030107038.1  uncharacterized protein LOC101055907 isoform X1

    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1

  2. XM_011247887.4 → XP_011246189.1  uncharacterized protein LOC101055907 isoform X1

    See identical proteins and their annotated locations for XP_011246189.1

    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1

  3. XM_036161758.1 → XP_036017651.1  uncharacterized protein LOC101055907 isoform X1

    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1

  4. XM_036161754.1 → XP_036017647.1  uncharacterized protein LOC101055907 isoform X1

    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1

  5. XM_036161757.1 → XP_036017650.1  uncharacterized protein LOC101055907 isoform X1

    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1

  6. XM_036161756.1 → XP_036017649.1  uncharacterized protein LOC101055907 isoform X1

    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1

  7. XM_011247891.4 → XP_011246193.1  uncharacterized protein LOC101055907 isoform X1

    See identical proteins and their annotated locations for XP_011246193.1

    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1

  8. XM_011247892.4 → XP_011246194.1  uncharacterized protein LOC101055907 isoform X1

    See identical proteins and their annotated locations for XP_011246194.1

    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1

  9. XM_030251180.2 → XP_030107040.1  uncharacterized protein LOC101055907 isoform X1

    Conserved Domains (2) summary
    TIGR01642
    Location:292 → 393
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11488
    Location:558 → 628
    Lge1; Transcriptional regulatory protein LGE1
Nucleotide Protein Strain
Heading Accession and Version

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