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LOC101059915 chromosome X open reading frame 49-like [ Homo sapiens (human) ]

Gene ID: 101059915, updated on 8-Mar-2024

Summary

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Gene symbol
LOC101059915
Gene description
chromosome X open reading frame 49-like
See related
Ensembl:ENSG00000283599
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.4) See more
Orthologs
all
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Genomic context

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Location:
Xq13.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (71667546..71671527)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (70100813..70104795)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (70887396..70891377)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29745 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29747 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29749 Neighboring gene C-X-C motif chemokine receptor 3 Neighboring gene Sharpr-MPRA regulatory region 2992 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29750 Neighboring gene chromosome X open reading frame 49 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29751 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29752 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:70888661-70889860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20899 Neighboring gene long intergenic non-protein coding RNA 891 Neighboring gene chromosome X open reading frame 49

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC101059915
Names
uncharacterized protein CXorf49-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001323075.3 → NP_001310004.1  uncharacterized protein LOC101059915

    Status: VALIDATED

    Source sequence(s)
    BX276092
    Consensus CDS
    CCDS87758.1
    UniProtKB/TrEMBL
    A0A1B0GWI6
    Related
    ENSP00000490941.2, ENST00000636096.3
    Conserved Domains (1) summary
    pfam15483
    Location:85 → 516
    DUF4641; Domain of unknown function (DUF4641)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    71667546..71671527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938436.3 RNA Sequence

  2. XR_938437.3 RNA Sequence

  3. XR_938438.3 RNA Sequence

  4. XR_001755635.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    70100813..70104795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_008485444.1 RNA Sequence

  2. XR_008485445.1 RNA Sequence

  3. XR_008485446.1 RNA Sequence

  4. XR_008485447.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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