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LINC01523 long intergenic non-protein coding RNA 1523 [ Homo sapiens (human) ]

Gene ID: 101060004, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01523provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1523provided by HGNC
Primary source
HGNC:HGNC:51225
See related
AllianceGenome:HGNC:51225
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.6) See more
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Genomic context

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Location:
20q13.13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (47983226..47984313)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (49751549..49752636)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (46611970..46613057)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene RNA, U7 small nuclear 92 pseudogene Neighboring gene uncharacterized LOC105372637 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46579981-46580540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46581153-46581653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46598923-46599424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46599425-46599924 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12982 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr20:46607945-46608919 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46611853-46612352 Neighboring gene uncharacterized LOC107985436 Neighboring gene long intergenic non-protein coding RNA 1522 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:46621816-46622316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18012 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46634734-46635234 Neighboring gene uncharacterized LOC107985437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46648566-46649066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46649067-46649567 Neighboring gene uncharacterized LOC105372639 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18013 Neighboring gene uncharacterized LOC124904923 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_60555

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109942.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI969358, AL357558, BX108395

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    47983226..47984313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    49751549..49752636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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